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Large-scale sequence comparisons with sourmash

Crossref DOI link: https://doi.org/10.12688/f1000research.19675.1

Published Online: 2019-07-04

Update policy: https://doi.org/10.12688/f1000research.crossmark-policy

Authors

Pierce, N. Tessa https://orcid.org/0000-0002-2942-5331
Irber, Luiz https://orcid.org/0000-0003-4371-9659
Reiter, Taylor

Brooks, Phillip https://orcid.org/0000-0003-3987-244X
Brown, C. Titus https://orcid.org/0000-0001-6001-2677
Funding

Funding for this research was provided by:

Gordon and Betty Moore Foundation (GBMF4551)

National Science Foundation (1711984)
License Information

Text and Data Mining valid from 2019-07-04
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Current Referee Status

Referee status: Indexed

Article Reports

Referee Report: https://doi.org/10.5256/f1000research.21579.r52588, Brad Solomon, Department of Computer Science, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, USA, 27 Aug 2019, version 1, indexed

Referee Report: https://doi.org/10.5256/f1000research.21579.r52218, Rayan Chikhi, C3BI USR 3756, CNRS (French National Center for Scientific Research), Institut Pasteur, Paris, France, 02 Sep 2019, version 1, indexed

Article Comments

Article Comment: <b>C. Titus Brown</b>; <i>Posted: 18 Jan 2022</i>; The reviewers indicated an interest in more details on the "scaled MinHash" that was briefly mentioned in this paper, and I wanted to point them (and other readers) at our new preprint on this, which has renamed scaled MinHash to "FracMinHash" and does the detailed explanation of what it is, how it works, and what its analytical properties are. Please see https://www.biorxiv.org/content/10.1101/2022.01.11.475838v2.

Grant Information: This work is funded in part by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative [GBMF4551 to CTB]. NTP was supported by a National Science Foundation Postdoctoral Fellowship in Biology [1711984]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Copyright: This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.