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Authors
Beddoe, Naomi https://orcid.org/0000-0002-7766-891X
Adams, Ian P. https://orcid.org/0000-0002-5589-6460
McGreig, Sam
Forsyth, Alec https://orcid.org/0000-0002-4283-3583
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Funding
Funding for this research was provided by:
Canterbury Christ Church University
Department for Environment, Food and Rural Affairs (EUPHRESCO VirusCurate)
Department for Environment, Food and Rural Affairs (EUPHRESCO VirusCurate)
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Article History
Received: 8 May 2020
Accepted: 14 July 2020
First Online: 4 September 2020
Compliance with ethical standards
:
: The authors declare that they have no conflict of interest.
: GenBank accession no. MT396083.
: Sequence data were aligned and visualised using Sequencher (Gene Codes). MinION data were recalled using Guppy3.3 (Oxford Nanopore Technologies) quality checked using NanoPlot (), NanoQC () and Nanofilt () and analysed using the Pomoxis pipeline (). MiSeq data were trimmed using Sickle version 1.33 () and assembled with Trinity version 2.8.4 (). Phylogenetic analyses were performed using MEGAX (). Recombination analyses were performed using RDP4.100 ().
