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Cancer subtype identification using somatic mutation data

Crossref DOI link: https://doi.org/10.1038/s41416-018-0109-7

Published Online: 2018-05-16

Published Print: 2018-05

Update policy: https://doi.org/10.1007/springer_crossmark_policy

Authors

Kuijjer, Marieke Lydia https://orcid.org/0000-0001-6280-3130
Paulson, Joseph Nathaniel

Salzman, Peter

Ding, Wei

Quackenbush, John
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Text and Data Mining valid from 2018-05-01
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Article History

Received: 16 January 2018

Revised: 11 April 2018

Accepted: 12 April 2018

First Online: 16 May 2018

Competing interests

: The authors declare no competing interests.

: Clinical data from TCGA are available in R package RTCGAToolbox. Mutation data from TCGA are available at Genomic Data Commons ( ). RPPA data from TCGA is available in R package RTCGA.RPPA. Gene signatures are available at the Molecular Signatures Database ( ). A list of drugs and their targets is available in CMap ( ). Mutation data in cell lines and IC50 scores from CGP are available at . Website access dates are described in the Methods section of our manuscript.