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Authors
Uyar, Bora https://orcid.org/0000-0002-3170-4890
Savchyn, Taras
Naghsh Nilchi, Amirhossein https://orcid.org/0000-0003-1329-3044
Sarigun, Ahmet
Wurmus, Ricardo https://orcid.org/0009-0003-0140-4189
Shaik, Mohammed Maqsood
Grüning, Björn https://orcid.org/0000-0002-3079-6586
Franke, Vedran https://orcid.org/0000-0003-3606-6792
Akalin, Altuna https://orcid.org/0000-0002-0468-0117
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Article History
Received: 25 August 2024
Accepted: 26 August 2025
First Online: 12 September 2025
Competing interests
: Bora Uyar, Vedran Franke and Altuna Akalin are part of a related patent application (Method for analysis of omics data, US Patent App. 18/274,271, 2024). The status of the patent application is currently pending. The patent application is about unsupervised integration of multi-omic datasets using neural networks (primarily auto-encoders). The current manuscript expands on the ideas listed in the patent by inclusion of a diversity of neural network architectures with a focus on supervised learning strategies, rather than only unsupervised learning. The remaining authors declare no competing interests.
