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Comparison of Illumina and Oxford Nanopore sequencing data quality for Clostridioides difficile genome analysis and their application for epidemiological surveillance

Crossref DOI link: https://doi.org/10.1186/s12864-025-11267-9

Published Online: 2025-01-30

Update policy: https://doi.org/10.1007/springer_crossmark_policy

Authors

Bejaoui, Semeh

Nielsen, Sofie Holtsmark

Rasmussen, Astrid

Coia, John Eugenio

Andersen, Dorte Terp

Pedersen, Tobias Bruun

Møller, Martin Vad

Kusk Nielsen, Marc Trunjer

Frees, Dorte

Persson, Søren
Funding

Funding for this research was provided by:

Tillots Pharma AB
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Text and Data Mining valid from 2025-01-30

Version of Record valid from 2025-01-30
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Article History

Received: 15 October 2024

Accepted: 21 January 2025

First Online: 30 January 2025

Declarations

:

: No ethical approval was required for this study since the data used was obtained as part of our routine surveillance program.

: The authors declare no competing interests.

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