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2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Crossref DOI link: https://doi.org/10.1186/s13059-021-02296-0

Published Online: 2021-03-01

Published Print: 2021-12

Update policy: https://doi.org/10.1007/springer_crossmark_policy

Authors

Parker, Matthew T.

Knop, Katarzyna

Barton, Geoffrey J.

Simpson, Gordon G. https://orcid.org/0000-0001-6744-5889
Funding

Funding for this research was provided by:

University of Dundee Global Challenges Research Fund

Biotechnology and Biological Sciences Research Council (BB/M01066/1, BB/J00247X/1, BB/M004155/1)

H2020 Marie Skłodowska-Curie Actions (799300)
License Information

Text and Data Mining valid from 2021-03-01

Version of Record valid from 2021-03-01
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Article History

Received: 27 May 2020

Accepted: 10 February 2021

First Online: 1 March 2021

Ethics approval and consent to participate

: Not applicable.

: The authors declare no competing interests.

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